PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA37G00019
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family B3
Protein Properties Length: 266aa    MW: 30704.8 Da    PI: 9.6132
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA37G00019genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.49.6e-12140240393
                 EE-..-HHHHT.T-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS.SEE CS
          B3   3 kvltpsdvlks.grlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr.sef 90 
                 k+lt sdv  + +rlvl kk +++         + + ee++++ ++ ++g ++++k+++ +++++ vlt+GW eFv++ng +   Df+++ + +r +++
  AA37G00019 140 KQLTESDVCVNqKRLVLGKKEVKDKflsrlkddDVPGEEGVDVLVYGPDGTVYDMKFKI-RNKNTLVLTNGWIEFVQDNGFRkYSDFLTIWMFKRsEDG 237
                 78999998655599********9999999999855556899****************65.55579****************977999998766665777 PP

                 ..E CS
          B3  91 elv 93 
                 + +
  AA37G00019 238 KIC 240
                 555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.88E-14136243No hitNo description
SuperFamilySSF1019362.94E-12137243IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-13137248IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0095138243IPR003340B3 DNA binding domain
PROSITE profilePS508639.46139247IPR003340B3 DNA binding domain
PfamPF023627.9E-8140243IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MMKAKDNSSD KLQEEKNNSS DEFKQENNNS SDDQNDNSSD DELSEKDITS SDPKAASAIK  60
KRKSPIKKRK AVMIKNSKQE VVTKKQKIVE EEEDDTEATL QLLKSRNKKG DKEIPPGRIR  120
TKIPDPESLS SSFYSKCIYK QLTESDVCVN QKRLVLGKKE VKDKFLSRLK DDDVPGEEGV  180
DVLVYGPDGT VYDMKFKIRN KNTLVLTNGW IEFVQDNGFR KYSDFLTIWM FKRSEDGKIC  240
FVIDSNRYKD ITKPVSKRIL KRVFKY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-20B3 family protein